The exhibits at the Yamanashi Prefectural Science Museum are divided into the following four zones.

Nature Zone: Exhibits related to nature, such as the earth, space, and living things.
Science and Technology Zone: Exhibits related to science and technology, such as the history and principles of science and technology.
Experimental Zone: Exhibits where you can learn science through hands-on experience
Future Zone: Exhibitions on future science and technology

Yamanashi Prefectural Science Museum has the following facilities.

Space Theater: Equipped with a planetarium and digital video theater
Play room: A space where you can learn while playing freely
Experiment workshop: A space where you can experience handicrafts and experiments
Science show: a show of scientific experiments
Workshops: Workshops such as scientific experiments and programming